RnoALTD0006739-1/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000021521 | Chst5
Description
carbohydrate sulfotransferase 5 [Source:RGD Symbol;Acc:1561144]
Coordinates
chr19:44115120-44118355:-
Coord C1 exon
chr19:44118283-44118355
Coord A exon
NA
Coord C2 exon
chr19:44115120-44116962
Length
0 bp
Sequences
Splice sites
5' ss Seq
GCAGTGAGT
5' ss Score
7.39
3' ss Seq
CCTGCCTCTCTTTTTCATAGGCT
3' ss Score
10.69
Exon sequences
Seq C1 exon
GCTCGAGGAACCTCCAGGTACCTCCCACGGGTTTGTGAGCAACACAAGCCAGCTCTCCCAGCCCTAGACAGCA
Seq A exon
NA
Seq C2 exon
GCTCTAGCCAGAGGCATGCGGCTACCCCGCTTCTCCAGCACTGTAGTGCTTTCGCTCCTGATAGTGCAGACCGGCATCCTGGTCTTCCTGGTCTCCCGGCAAATGCCATCATCCCCAGCAGGCCGTGGGGAGCATGTGCATGTGCTGGTGCTGTCCTCCTGGCGCTCGGGCTCGTCTTTCGTGGGCCAGCTCTTCAGCCAACACCCGGATGTCTTCTACCTGATGGAGCCAGCTTGGCACGTGTGGGATGCGTTGTCGCAGGCCAGTGCCCCCGCGCTCCACATGGCCGTGCGCGACCTGATCCGTTCAGTGTTCCTATGCGACATGGACGTGTTCGATGCCTACCTGCCCTGGCGCCGCAATATCTCGGATCTCTTCCAGTGGGCAGTGAGCCGGGCGTTGTGCTCGCCTCCAGTCTGCGACGCCTTCGCTCGGGGCAACATTAGCAGCGAGGAGGTGTGTAAGCCTCTGTGTGCAACGCGGCCCTTCGGCCTGGCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021521-1-1,2-1-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.030
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0068522=Sulfotransfer_1=WD(100=79.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
ENSRNOT00000026262fB3119
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCAACACAAGCCAGCTCTC
R:
AGGTAGAAGACATCCGGGTGT
Band lengths:
258-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]