HsaEX0015442 @ hg19
Exon Skipping
Gene
ENSG00000148337 | CIZ1
Description
CDKN1A interacting zinc finger protein 1 [Source:HGNC Symbol;Acc:16744]
Coordinates
chr9:130931685-130932386:-
Coord C1 exon
chr9:130932299-130932386
Coord A exon
chr9:130931902-130931979
Coord C2 exon
chr9:130931685-130931798
Length
78 bp
Sequences
Splice sites
3' ss Seq
TCTGCCATCCTATCTCTCAGCCA
3' ss Score
6.5
5' ss Seq
ATGGTGGGC
5' ss Score
4.9
Exon sequences
Seq C1 exon
GGAGCCTCCACCAAGGCGCTGGTGCAACACCTGCCAGCTCTACTACATGGGGGACCTGATCCAACACCGCAGGACACAGGACCACAAG
Seq A exon
CCACCCACACCACGAAGAGATGTGTTTGCCCACGTTCCAGTGCAGGGGTGGAGCACAGCCCGGCTTGTTACAGATATG
Seq C2 exon
ATTGCCAAACAATCCTTGCGACCCTTCTGCACCGTTTGCAACCGCTACTTCAAAACCCCTCGCAAGTTTGTGGAGCACGTGAAGTCCCAGGGGCATAAGGACAAAGCCAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148337_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.189 A=0.423 C2=0.126
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF121713=zf-C2H2_jaz=WD(100=71.1)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCAGCTCTACTACATGGGG
R:
TTGGCTTTGTCCTTATGCCCC
Band lengths:
167-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)