HsaEX0015442 @ hg38
Exon Skipping
Gene
ENSG00000148337 | CIZ1
Description
CDKN1A interacting zinc finger protein 1 [Source:HGNC Symbol;Acc:HGNC:16744]
Coordinates
chr9:128169406-128170107:-
Coord C1 exon
chr9:128170020-128170107
Coord A exon
chr9:128169623-128169700
Coord C2 exon
chr9:128169406-128169519
Length
78 bp
Sequences
Splice sites
3' ss Seq
TCTGCCATCCTATCTCTCAGCCA
3' ss Score
6.5
5' ss Seq
ATGGTGGGC
5' ss Score
4.9
Exon sequences
Seq C1 exon
GGAGCCTCCACCAAGGCGCTGGTGCAACACCTGCCAGCTCTACTACATGGGGGACCTGATCCAACACCGCAGGACACAGGACCACAAG
Seq A exon
CCACCCACACCACGAAGAGATGTGTTTGCCCACGTTCCAGTGCAGGGGTGGAGCACAGCCCGGCTTGTTACAGATATG
Seq C2 exon
ATTGCCAAACAATCCTTGCGACCCTTCTGCACCGTTTGCAACCGCTACTTCAAAACCCCTCGCAAGTTTGTGGAGCACGTGAAGTCCCAGGGGCATAAGGACAAAGCCAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148337_MULTIEX1-8/9=7-9
Average complexity
S*
Mappability confidence:
92%=92=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.230 A=0.434 C2=0.123
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF121713=zf-C2H2_jaz=WD(100=71.1)
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCAGCTCTACTACATGGGG
R:
TTGGCTTTGTCCTTATGCCCC
Band lengths:
167-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development