HsaEX0015609 @ hg19
Exon Skipping
Gene
ENSG00000150048 | CLEC1A
Description
C-type lectin domain family 1, member A [Source:HGNC Symbol;Acc:24355]
Coordinates
chr12:10241723-10251584:-
Coord C1 exon
chr12:10251407-10251584
Coord A exon
chr12:10245021-10245118
Coord C2 exon
chr12:10241723-10241821
Length
98 bp
Sequences
Splice sites
3' ss Seq
GATCTTGCTCTGTCACCCAGGCT
3' ss Score
5.7
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
ACAGTAGCCCGGCGGCCCAGGGCAATCCGACCACATTTCACTCTCACCGCTGTAGGAATCCAGATGCAGGCCAAGTACAGCAGCACGAGGGACATGCTGGATGATGATGGGGACACCACCATGAGCCTGCATTCTCAAGGCTCTGCCACAACTCGGCATCCAGAGCCCCGGCGCACAG
Seq A exon
GCTGGAGTAGAGTGGCACGATCACGACTCACTGCAGCCTTGACCTCCCTGGCTCAAGCAATCCTCCCACCTCAGCCTTCTGAGTAGCTGCGACTACAG
Seq C2 exon
AGCACAGGGCTCCCTCTTCAACGTGGCGACCAGTGGCCCTGACCCTGCTGACTTTGTGCTTGGTGCTGCTGATAGGGCTGGCAGCCCTGGGGCTTTTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000150048-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.851 A=0.857 C2=0.176
Domain overlap (PFAM):
C1:
PF066977=DUF1191=PU(29.4=82.1)
A:
NO
C2:
PF066977=DUF1191=FE(30.3=100),PF083915=Ly49=PU(23.0=82.4),PF041569=IncA=PU(31.5=82.4),PF039189=CcmH=PU(24.4=58.8)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGATGCAGGCCAAGTACAG
R:
AAGCACAAAGTCAGCAGGGTC
Band lengths:
180-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)