HsaEX0015610 @ hg19
Exon Skipping
Gene
ENSG00000150048 | CLEC1A
Description
C-type lectin domain family 1, member A [Source:HGNC Symbol;Acc:24355]
Coordinates
chr12:10233836-10251584:-
Coord C1 exon
chr12:10251407-10251584
Coord A exon
chr12:10241723-10241821
Coord C2 exon
chr12:10233836-10234012
Length
99 bp
Sequences
Splice sites
3' ss Seq
TTCTCTTCTGTTCCCTGCAGAGC
3' ss Score
12.12
5' ss Seq
TGTGTAAGT
5' ss Score
7.65
Exon sequences
Seq C1 exon
ACAGTAGCCCGGCGGCCCAGGGCAATCCGACCACATTTCACTCTCACCGCTGTAGGAATCCAGATGCAGGCCAAGTACAGCAGCACGAGGGACATGCTGGATGATGATGGGGACACCACCATGAGCCTGCATTCTCAAGGCTCTGCCACAACTCGGCATCCAGAGCCCCGGCGCACAG
Seq A exon
AGCACAGGGCTCCCTCTTCAACGTGGCGACCAGTGGCCCTGACCCTGCTGACTTTGTGCTTGGTGCTGCTGATAGGGCTGGCAGCCCTGGGGCTTTTGT
Seq C2 exon
TTTTTCAGTACTACCAGCTCTCCAATACTGGTCAAGACACCATTTCTCAAATGGAAGAAAGATTAGGAAATACGTCCCAAGAGTTGCAATCTCTTCAAGTCCAGAATATAAAGCTTGCAGGAAGTCTGCAGCATGTGGCTGAAAAACTCTGTCGTGAGCTGTATAACAAAGCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000150048-'0-2,'0-1,2-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.851 A=0.176 C2=0.167
Domain overlap (PFAM):
C1:
PF066977=DUF1191=PU(29.4=82.1)
A:
PF066977=DUF1191=FE(30.3=100),PF083915=Ly49=PU(23.0=82.4),PF041569=IncA=PU(31.5=82.4),PF039189=CcmH=PU(24.4=58.8)
C2:
PF066977=DUF1191=PD(39.4=71.7),PF083915=Ly49=FE(48.4=100),PF041569=IncA=FE(66.3=100),PF039189=CcmH=FE(72.0=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACAACTCGGCATCCAGAG
R:
CCACATGCTGCAGACTTCCTG
Band lengths:
171-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)