MmuEX0011648 @ mm10
Exon Skipping
Gene
ENSMUSG00000033082 | Clec1a
Description
C-type lectin domain family 1, member a [Source:MGI Symbol;Acc:MGI:2444151]
Coordinates
chr6:129435117-129452000:-
Coord C1 exon
chr6:129451604-129452000
Coord A exon
chr6:129436914-129437012
Coord C2 exon
chr6:129435117-129435293
Length
99 bp
Sequences
Splice sites
3' ss Seq
TTTCTCCTTGTTCCCCACAGAGA
3' ss Score
11.7
5' ss Seq
TGTGTAAGT
5' ss Score
7.65
Exon sequences
Seq C1 exon
GGGTCTGTAAAAGGCGGATATTTTAATAACTGTTCACAGACCGCCCAGCCAGAAACACGCGATTTCCCCTCAGCCAGACTAACTTGGCATTCTGAATACAGGCTCAGAGGGGAGGGGCCGGGTCTCTCCATGCAGGAACTGGAGTCAGAGGCTTCCCTTGCTGCTTGCAGGGAAAGACTATTAAGAATGCCTCTCAGTGCCTGGTTTCCTGAGGTATCTGAGGGTAGACAGGCGGCCTCTCGAGCAATCTGAGCACATCTCACCGGCATCTCTGCAGGAATCAGGATGCAGGCCAAATACAGCAGCACAAGGGACATGCTCGATGATGATGATACCACCATAAGCCTGTATTCTGGAACCTCCACTGTCACCAGACGTGCAGAGCCCAGGCACTCAG
Seq A exon
AGAATGGGACACCCTCTTCAGTTTGGCGCCCAGTGGCCCTGACCCTGCTGACCTTGTGTTTGGTGCTGCTCGTTGGCCTGGCAGCCCTGGGCCTTGTGT
Seq C2 exon
TTTTTCAGTTCTACCAGCTGTCTAATATCCAGCAAGACAGCATCACTGAAAAGGATGAAAAGCTGGGGAACATGTCCCGACAGCTACAGTCTCTCCAGGCCCAGAACAGAAAACTCATTGAAACTCTACAGCAGGTAGCCGTAAAACTGTGCCGTGAACTTTACAACAAAAGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033082-'0-4,'0-2,4-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.355 A=0.169 C2=0.085
Domain overlap (PFAM):
C1:
PF043759=HemX=PU(10.9=39.5)
A:
PF043759=HemX=FE(23.9=100),PF041569=IncA=PU(30.5=73.5)
C2:
PF043759=HemX=FE(42.8=100),PF041569=IncA=PD(68.3=93.3)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAATCAGGATGCAGGCCAAA
R:
CAGTGATGCTGTCTTGCTGGA
Band lengths:
169-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types