RnoEX0021696 @ rn6
Exon Skipping
Gene
ENSRNOG00000060460 | Clec1a
Description
C-type lectin domain family 1, member A [Source:RGD Symbol;Acc:1566110]
Coordinates
chr4:163200606-163214678:-
Coord C1 exon
chr4:163214282-163214678
Coord A exon
chr4:163201975-163202073
Coord C2 exon
chr4:163200606-163200782
Length
99 bp
Sequences
Splice sites
3' ss Seq
TTTCTCTTTGTTTCCTGCAGAGA
3' ss Score
12.06
5' ss Seq
TGTGTAAGT
5' ss Score
7.65
Exon sequences
Seq C1 exon
GGTCTGAAAAAGCCAGATATTTTAATAACGGTTCACGGATCGCTTAGCCAGAAAACACATGCAATTTTCCCTCAGCCAGACTAACTTGGCATTCTGAATACAGGCTCAGAGGGGAGGGGCTGGGCCTCTCCACGCAGGAACTGGAGTCAGAGGCTTCCCTTGCTGCCTGCAGGGAGAGACCATTAAGAATGCCTCTCAGTGCCTGGTTTCCTGAGGTATCTGAGAGTAGACAGGCGACCTCGAGGAATCTGAGCACATCTCACCGGCATTTCTGCAGGAATCAGGATGCAGGCCAAATACAGCAGCACAAGGGACATGCTCGATGACGATGACACCACCATAAGCCTGTATTCTGGAACATCCACTGTCACCAGACGAGCAGAGCCCAGGCACTCAG
Seq A exon
AGAATGGGACACCCTCTTCAGTTTGGCGCCCAGTGGCCCTGACCCTGCTGACCTTGTGTTTGGTGTTGCTCGTTGGCCTGGCAGCCCTGGGCCTTGTGT
Seq C2 exon
TTTTTCAGTTCTACCAGCTCTCCAATACCCAGCAGGACAGCATCACTGAAAAGGATGAAAGGCTGGGGAACATGTCCCGACAACTACAGTCCCTCCAGACCCAGAACAGAAAACTCACTGAAACTCTGCAGCAGGTAGCCGTAAAACTGTGTCGTGAACTTTACAACAAAAGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000060460-'0-2,'0-1,1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.447 A=0.176 C2=0.150
Domain overlap (PFAM):
C1:
PF043759=HemX=PU(10.7=39.5)
A:
PF043759=HemX=FE(23.6=100),PF041569=IncA=PU(29.4=73.5)
C2:
PF043759=HemX=FE(42.1=100),PF041569=IncA=FE(69.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAGGAATCAGGATGCAGG
R:
TGATGCTGTCCTGCTGGGTAT
Band lengths:
171-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]