HsaEX0015610 @ hg38
Exon Skipping
Gene
ENSG00000150048 | CLEC1A
Description
C-type lectin domain family 1 member A [Source:HGNC Symbol;Acc:HGNC:24355]
Coordinates
chr12:10081237-10098985:-
Coord C1 exon
chr12:10098808-10098985
Coord A exon
chr12:10089082-10089222
Coord C2 exon
chr12:10081237-10081413
Length
141 bp
Sequences
Splice sites
3' ss Seq
TTCTCTTCTGTTCCCTGCAGAGC
3' ss Score
12.12
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
Exon sequences
Seq C1 exon
ACAGTAGCCCGGCGGCCCAGGGCAATCCGACCACATTTCACTCTCACCGCTGTAGGAATCCAGATGCAGGCCAAGTACAGCAGCACGAGGGACATGCTGGATGATGATGGGGACACCACCATGAGCCTGCATTCTCAAGGCTCTGCCACAACTCGGCATCCAGAGCCCCGGCGCACAG
Seq A exon
AGCACAGGGCTCCCTCTTCAACGTGGCGACCAGTGGCCCTGACCCTGCTGACTTTGTGCTTGGTGCTGCTGATAGGGCTGGCAGCCCTGGGGCTTTTGTGTAAGTCTGCGCTCTGACCTGGGGGAGGATCCTGGTTCCAAG
Seq C2 exon
TTTTTCAGTACTACCAGCTCTCCAATACTGGTCAAGACACCATTTCTCAAATGGAAGAAAGATTAGGAAATACGTCCCAAGAGTTGCAATCTCTTCAAGTCCAGAATATAAAGCTTGCAGGAAGTCTGCAGCATGTGGCTGAAAAACTCTGTCGTGAGCTGTATAACAAAGCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000150048_MULTIEX1-3/6=1-4
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.851 A=0.169 C2=0.150
Domain overlap (PFAM):
C1:
PF066977=DUF1191=PU(30.6=87.2)
A:
PF066977=DUF1191=FE(29.7=100),PF041569=IncA=PU(29.2=82.4),PF083915=Ly49=PU(28.6=82.4)
C2:
PF066977=DUF1191=PD(38.7=71.7),PF041569=IncA=FE(61.5=100),PF083915=Ly49=FE(60.2=100)
Main Inclusion Isoform:
ENST00000457018fB1662
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGATGCAGGCCAAGTACAG
R:
CCACATGCTGCAGACTTCCTG
Band lengths:
257-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development