HsaEX0015637 @ hg19
Exon Skipping
Gene
ENSG00000172243 | CLEC7A
Description
C-type lectin domain family 7, member A [Source:HGNC Symbol;Acc:14558]
Coordinates
chr12:10275844-10278047:-
Coord C1 exon
chr12:10277896-10278047
Coord A exon
chr12:10277536-10277628
Coord C2 exon
chr12:10275844-10275962
Length
93 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTGTATTTTTCATAGAGA
3' ss Score
7.93
5' ss Seq
GGTGTAAGC
5' ss Score
4.48
Exon sequences
Seq C1 exon
GGGTTCTTTCCAGCCCTTGTCCTCCTAATTGGATTATATATGAGAAGAGCTGTTATCTATTCAGCATGTCACTAAATTCCTGGGATGGAAGTAAAAGACAATGCTGGCAACTGGGCTCTAATCTCCTAAAGATAGACAGCTCAAATGAATTG
Seq A exon
AGACGAGGTTTCTCCATATCATCTGGGCTGGTCTCAAAATCCTGGGCACAAGCGATCTGCCTACCTCGATCTCCCAGTGTTGGGATTACAGGT
Seq C2 exon
GGATTTATAGTAAAACAAGTGTCTTCCCAACCTGATAATTCATTTTGGATAGGCCTTTCTCGGCCCCAGACTGAGGTACCATGGCTCTGGGAGGATGGATCAACATTCTCTTCTAACTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172243-'6-7,'6-6,8-7
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0033515=Tetraspannin=PD(35.1=92.2),PF0769011=MFS_1=PD(25.4=56.9),PF083915=Ly49=PD(1.3=2.0),PF059667=Chordopox_A33R=FE(41.0=100)
A:
PF0005916=Lectin_C=PU(9.1=25.8)
C2:
PF0033515=Tetraspannin=PD(2.1=7.5),PF0005916=Lectin_C=FE(36.4=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCAGCCCTTGTCCTCCTAA
R:
TCAGGTTGGGAAGACACTTGT
Band lengths:
180-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)