HsaEX0015661 @ hg38
Exon Skipping
Gene
ENSG00000130779 | CLIP1
Description
CAP-Gly domain containing linker protein 1 [Source:HGNC Symbol;Acc:HGNC:10461]
Coordinates
chr12:122380368-122424087:-
Coord C1 exon
chr12:122423638-122424087
Coord A exon
chr12:122417327-122417463
Coord C2 exon
chr12:122380368-122380558
Length
137 bp
Sequences
Splice sites
3' ss Seq
AAATTGCTTTTGTTTTTTAGAGA
3' ss Score
7.16
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
AGTGCTAGAATTACAGGCGTGAGCCACCACACCCAGCCCCAAAACAATATTTTTAATAAAGACAGGCTCAGCCTACTGAGTAGAGAAGAAAAGACAAGCCCATAAGTGTTCCTAGCTGAACTCCCCCATTAGAAGTGGTCTGTGCCTCATCCTATGACATCTATGATTCCACAGCTTGCTGATTACAGCTGAAGACTGTTTAGATTAGGGGGTGAGGCGCGCCTTTCAGATTAGGAATATGGATATGGGATTTCAGGAGTACCACCACCACCTGACCTTGCAGCCTGTAAATTAGGGCGATGTTGAATTAGGTAACAGCATTTCGAGGGATTTCAGACATGAATGGAGAGGAGGGGCCAGGAGACAAATTTACATAGTTCAGAACTTCGTGCATTACCAGAGCAGTTCCCTCTTCCTGCTGGTCCAGGCAGCACGGTGCTTTGAATAAAG
Seq A exon
AGACAGAGTCTCACTCGGTCACCAGGCTGGAGTGCAGTGGCACAATTATAACTCACTATAGCCTTGGACTCCTGGACTCAAGCCGTCCTCCTGCCTCAGCCTCCCAAGTAGCTAGGAGGTGTGTACCACCACACACA
Seq C2 exon
ATTTAATCCAGAGACTGACTTCACTATAGAACCCACAGTTGTATCAATGGTTGGGGAAAGATAGTGGCAACAGGCAAAGGAGAAACAGCTCTGACATACAAAGAAAATGAGTATGCTAAAGCCAAGTGGGCTTAAGGCCCCCACCAAGATCCTGAAGCCTGGAAGCACAGCTCTGAAGACACCTACGGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130779_MULTIEX5-1/3=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.235
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGCCTGTAAATTAGGGCG
R:
TTTCTCCTTTGCCTGTTGCCA
Band lengths:
257-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development