HsaEX0015707 @ hg19
Exon Skipping
Gene
ENSG00000113240 | CLK4
Description
CDC-like kinase 4 [Source:HGNC Symbol;Acc:13659]
Coordinates
chr5:178032304-178035459:-
Coord C1 exon
chr5:178035377-178035459
Coord A exon
chr5:178032826-178032866
Coord C2 exon
chr5:178032304-178032383
Length
41 bp
Sequences
Splice sites
3' ss Seq
TACTATCTGGCCCTTTACAGAAG
3' ss Score
7.68
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
CTTTAGGTTGGTCTCAGCCTTGTGATGTTTGGAGCATAGGTTGCATTCTTATTGAATATTACCTTGGTTTCACAGTCTTTCAG
Seq A exon
AAGTTTGCCAACCTCTGCTCTAGAAGCATACCATTCCAGCT
Seq C2 exon
ACTCATGATAGTAAAGAGCACCTGGCAATGATGGAACGAATATTAGGACCCATACCACAACACATGATTCAGAAAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000113240_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(11.3=100)
A:
PF0006920=Pkinase=FE(5.4=100)
C2:
PF0006920=Pkinase=PD(2.1=45.5)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTTGGTCTCAGCCTTGTGA
R:
CATGTGTTGTGGTATGGGTCCT
Band lengths:
145-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)