HsaEX0015707 @ hg38
Exon Skipping
Gene
ENSG00000113240 | CLK4
Description
CDC like kinase 4 [Source:HGNC Symbol;Acc:HGNC:13659]
Coordinates
chr5:178605303-178608458:-
Coord C1 exon
chr5:178608376-178608458
Coord A exon
chr5:178605825-178605865
Coord C2 exon
chr5:178605303-178605382
Length
41 bp
Sequences
Splice sites
3' ss Seq
TACTATCTGGCCCTTTACAGAAG
3' ss Score
7.68
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
CTTTAGGTTGGTCTCAGCCTTGTGATGTTTGGAGCATAGGTTGCATTCTTATTGAATATTACCTTGGTTTCACAGTCTTTCAG
Seq A exon
AAGTTTGCCAACCTCTGCTCTAGAAGCATACCATTCCAGCT
Seq C2 exon
ACTCATGATAGTAAAGAGCACCTGGCAATGATGGAACGAATATTAGGACCCATACCACAACACATGATTCAGAAAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000113240_MULTIEX3-3/4=2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(8.5=100)
A:
NA
C2:
PF0006920=Pkinase=FE(8.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTTGGTCTCAGCCTTGTGA
R:
CATGTGTTGTGGTATGGGTCCT
Band lengths:
145-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development