HsaEX0016080 @ hg38
Exon Skipping
Gene
ENSG00000044459 | CNTLN
Description
centlein [Source:HGNC Symbol;Acc:HGNC:23432]
Coordinates
chr9:17332605-17340948:+
Coord C1 exon
chr9:17332605-17332730
Coord A exon
chr9:17333850-17333954
Coord C2 exon
chr9:17340827-17340948
Length
105 bp
Sequences
Splice sites
3' ss Seq
TTCATTTGTTTCCTCAATAGCAA
3' ss Score
6.92
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GAACCACCTGTGAAACGTTCAAGGTCTTTGTCCCCAAAGAGCTCTTTCACAGACTCAGAAGAGCTACAGAAGCTGAGAAAAGCTGAAAGAAAGATTGAAAACTTAGAGAAGGCACTACAACTAAAG
Seq A exon
CAATTACTGAGCATTGCAATTAGCTAAGCATCATACTAGTACTTGTCTAACAGGAGACTGTTAAATGAGTTGCTATCCTTCAAGACCCTTTCTCTAGTTAAGAAG
Seq C2 exon
AGCCAAGAAAATGATGAGCTAAGAGATGCCCATGAAAAACGCAAGGAACGGCTACAGATGTTACAGACCAACTACAGAGCAGTAAAAGAGCAATTAAAACAGTGGGAAGAAGGCAGTGGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000044459_MULTIEX4-2/3=C1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.808 A=0.000 C2=0.652
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000380647fB1706
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCACCTGTGAAACGTTCAAGG
R:
CACTGCCTTCTTCCCACTGTT
Band lengths:
242-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development