HsaEX0016081 @ hg19
Exon Skipping
Gene
ENSG00000044459 | CNTLN
Description
centlein, centrosomal protein [Source:HGNC Symbol;Acc:23432]
Coordinates
chr9:17342323-17366715:+
Coord C1 exon
chr9:17342323-17342442
Coord A exon
chr9:17365279-17365375
Coord C2 exon
chr9:17366615-17366715
Length
97 bp
Sequences
Splice sites
3' ss Seq
CTCTTTTCCTCCTGTTCCAGCCA
3' ss Score
9.33
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
GACTGAAATCAGGAAAATAAAGAGAGCAGATCCCCAACAACTTCGACAAGAAGATTCTGACGCTGTGTGGAATGAACTGGCATATTTCAAAAGGGAAAACCAGGAGCTAATGATTCAAAA
Seq A exon
CCATGTAAGACCTGCCTGCTTCCTGTTCCCCTTCTGCCATGAATGTTAAGTTTCATGAGGCCTCCTCAGCCATGCTTCCTGTACAGTCTGTGGAACT
Seq C2 exon
GATGAATCTTGAAGAAGAATTAGATGAACTTAAAGTACATATATCTATTGATAAGGCAGCAATACAAGAATTGAATAGATGTGTGGCAGAGAGAAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000044459-'21-20,'21-19,22-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.437 A=0.000 C2=0.057
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGACGCTGTGTGGAATGA
R:
CTTCTCTTCTCTCTGCCACACA
Band lengths:
167-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)