HsaEX0016095 @ hg19
Exon Skipping
Gene
ENSG00000044459 | CNTLN
Description
centlein, centrosomal protein [Source:HGNC Symbol;Acc:23432]
Coordinates
chr9:17342323-17388251:+
Coord C1 exon
chr9:17342323-17342442
Coord A exon
chr9:17366615-17366715
Coord C2 exon
chr9:17388160-17388251
Length
101 bp
Sequences
Splice sites
3' ss Seq
TGTTTATTGCTTTTTCATAGGAT
3' ss Score
9.52
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GACTGAAATCAGGAAAATAAAGAGAGCAGATCCCCAACAACTTCGACAAGAAGATTCTGACGCTGTGTGGAATGAACTGGCATATTTCAAAAGGGAAAACCAGGAGCTAATGATTCAAAA
Seq A exon
GATGAATCTTGAAGAAGAATTAGATGAACTTAAAGTACATATATCTATTGATAAGGCAGCAATACAAGAATTGAATAGATGTGTGGCAGAGAGAAGAGAAG
Seq C2 exon
AACAGCTCTTTAGATCTGGTGAAGATGATGAGGTCAAGAGGAGTACTCCAGAGAAGAATGGAAAAGAAATGTTGGAGCAGACATTACAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000044459_MULTIEX2-1/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.437 A=0.057 C2=0.880
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0003816=Filament=PU(2.8=12.9)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAAATCAGGAAAATAAAGAGAGCA
R:
CTTCTGTAATGTCTGCTCCAACA
Band lengths:
210-311
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)