DreEX6031822 @ danRer10
Exon Skipping
Gene
ENSDARG00000033345 | cntln
Description
centlein, centrosomal protein [Source:ZFIN;Acc:ZDB-GENE-090313-409]
Coordinates
chr1:26190695-26222863:-
Coord C1 exon
chr1:26222768-26222863
Coord A exon
chr1:26197910-26197995
Coord C2 exon
chr1:26190695-26190792
Length
86 bp
Sequences
Splice sites
3' ss Seq
AAAATGTTTAATTTGTTTAGAGC
3' ss Score
3.81
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
GGTGAAGCACAAAGTACAATTTCCACAGGACAATGAGGGTTTATGGAAAGAACTGTTTTTCTATAAGGAGGAGAACAGGAAGCTACTCGCTGACAA
Seq A exon
AGCTAATATGGAGGAGGAACTAAACGCAGCCCTGGACAGAATTGCAGCACAGGAGATCCAAGAGGATCGGCGGGAGGCAGCGCAAG
Seq C2 exon
CAGAGCTTCTGTTTCGGGAAGTGGCGGAGGAGGAGGTCACAAGGAGCAGCACCCCCATCAAGACAACCATGCGAAGAGTGGAAGAGACTTTTAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000033345-'17-15,'17-14,18-15=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.242 A=0.333 C2=0.394
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCCACAGGACAATGAGGGT
R:
AAGTCTCTTCCACTCTTCGCA
Band lengths:
167-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]