HsaEX0016085 @ hg38
Exon Skipping
Gene
ENSG00000044459 | CNTLN
Description
centlein [Source:HGNC Symbol;Acc:HGNC:23432]
Coordinates
chr9:17415966-17457715:+
Coord C1 exon
chr9:17415966-17416189
Coord A exon
chr9:17427048-17427249
Coord C2 exon
chr9:17457524-17457715
Length
202 bp
Sequences
Splice sites
3' ss Seq
TTATTACCTTTCTATCCTAGCAA
3' ss Score
7.01
5' ss Seq
TAGGTGACT
5' ss Score
3.75
Exon sequences
Seq C1 exon
TCAACAGAGAAAAGTACAAAAATATAACTGCCCAGAAATCAAGTAGCAATATTATTTTATTACGAGAACGGATTATATCCTTGCAACAACAAAACAGTGTACTTCAGAATGCCAAGAAAACAGCAGAATTGTCTGTTAAAGAATATAAAGAAGTTAATGAAAAGCTCCTCCATCAACAGCAAGTATCCGATCAACGATTTCAGACAAGCAGGCAGACAATAAAG
Seq A exon
CAATATTTTTTAGTCTACCCTTGAACTGAAGTTGCAGCACTCCAGAGGATTCTCAAATTTGGCCTCTCCGAGCCCAAGGTCAAAGTTTCAGCTCCTGCTCCCACAATTCCTGAAGTTGCTGGCCCTGGTGATTTCCATGCAGCAGGTGCTACCGAACCTCCAGTCACATGCTCCGTGCTCTGCTGCTGGCTGCTCTCTATAG
Seq C2 exon
AAGCTAAATTTGGATTTGGCTGGGCTTCGGAAAGAAAAAGAAGATTTACTAAAGAAATTGGAGTCCTCATCTGAAATCACAAGTTTGGCAGAAGAAAATTCCCAGGTAACATTTCCACGGATACAAGTTACATCACTTAGTCCTTCAAGGAGCATGGATTTGGAAATGAAGCAATTGCAGTATAAACTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000044459_MULTIEX1-2/3=C1-C2
Average complexity
ME(2-3[95=100])
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.331 A=0.000 C2=0.177
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000380647fB1708
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGCCCAGAAATCAAGTAGCA
R:
ACCTGGGAATTTTCTTCTGCCA
Band lengths:
305-507
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development