HsaEX0016161 @ hg19
Exon Skipping
Gene
ENSG00000082438 | COBLL1
Description
COBL-like 1 [Source:HGNC Symbol;Acc:23571]
Coordinates
chr2:165600197-165697922:-
Coord C1 exon
chr2:165697666-165697922
Coord A exon
chr2:165617793-165617963
Coord C2 exon
chr2:165600197-165600385
Length
171 bp
Sequences
Splice sites
3' ss Seq
GCATTTTTTTTTTTTTTGAGATG
3' ss Score
3.21
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
CGGCGCCCGCGGGCTGGGAGCCGGGGCCCGCAGGTGGAAGCGCACCCGGGAGGCGGGCCGGCCGGGGCTGGAGCGGCTCGGGCGGGCTCTTGACGCTCAGCCAGCTTCGCTCCGGCCTCGGGAAGGCGCGCGTCCCGCCCTGACCCGCCGGCCTCTCCCACCCCAGCAGTGACGCGCCGCCTGGGAGCTGGAGCCCGCGCAGCGCCCCGCAGGGCGATGGACGGCCGAACCCCGCGCCCGCAGGACGCCCCAGCCAG
Seq A exon
ATGGAGTTTCACTCTTGTTACCCAGGCTCGAGTGCAATGATGCGAGCTTGGCTCTTTCGCTCTTGTTACTCAGGCTCGAGTGCAATGATGCGAGCTTGGCTCACTGCAACCTCTGCTTCCCAGCTTCAAGTGATTCTCCTGCCTCAGCCTCCCGAGTAGCTAGTATTACAG
Seq C2 exon
GAGAAAACCAAAAGCCAAGGCACCACTTCCTCCAGCTGAGACCAAATATACTGATGTCTCTTCAGCTGCTGATTCTGTAGAATCCACTGCTTTCATCATGGAACAGAAAGAAAACATGATAGATAAAGACGTTGAACTCTCAGTGGTCCTACCTGGGGATATTATCAAATCTACTACTGTTCATGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000082438_MULTIEX2-4/10=C1-5
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.998 A=0.615 C2=0.370
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0219610=RBD=PU(23.6=26.6)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTTGACGCTCAGCCAGC
R:
CAGCAGCTGAAGAGACATCAGT
Band lengths:
242-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)