HsaEX0016161 @ hg38
Exon Skipping
Gene
ENSG00000082438 | COBLL1
Description
cordon-bleu WH2 repeat protein like 1 [Source:HGNC Symbol;Acc:HGNC:23571]
Coordinates
chr2:164743687-164772046:-
Coord C1 exon
chr2:164771944-164772046
Coord A exon
chr2:164761283-164761453
Coord C2 exon
chr2:164743687-164743875
Length
171 bp
Sequences
Splice sites
3' ss Seq
GCATTTTTTTTTTTTTTGAGATG
3' ss Score
3.21
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
AAGGAAGAGGAGAAGGTACCTCTTGGTGTCTTGTTTACTCCCACTATGCATACGTTCTTTAGAAAGCAAATTACTGAACCATATGGAAAAGGAAAAAGCTAAG
Seq A exon
ATGGAGTTTCACTCTTGTTACCCAGGCTCGAGTGCAATGATGCGAGCTTGGCTCTTTCGCTCTTGTTACTCAGGCTCGAGTGCAATGATGCGAGCTTGGCTCACTGCAACCTCTGCTTCCCAGCTTCAAGTGATTCTCCTGCCTCAGCCTCCCGAGTAGCTAGTATTACAG
Seq C2 exon
GAGAAAACCAAAAGCCAAGGCACCACTTCCTCCAGCTGAGACCAAATATACTGATGTCTCTTCAGCTGCTGATTCTGTAGAATCCACTGCTTTCATCATGGAACAGAAAGAAAACATGATAGATAAAGACGTTGAACTCTCAGTGGTCCTACCTGGGGATATTATCAAATCTACTACTGTTCATGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000082438-'21-32,'21-29,27-32=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.352
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCTTGGTGTCTTGTTTACTCCC
R:
CCCAGGTAGGACCACTGAGAG
Band lengths:
242-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development