HsaEX0016372 @ hg19
Exon Skipping
Gene
ENSG00000082293 | COL19A1
Description
collagen, type XIX, alpha 1 [Source:HGNC Symbol;Acc:2196]
Coordinates
chr6:70831772-70847639:+
Coord C1 exon
chr6:70831772-70831834
Coord A exon
chr6:70840074-70840115
Coord C2 exon
chr6:70847577-70847639
Length
42 bp
Sequences
Splice sites
3' ss Seq
AAATTGTTTTTCACCCCTAGGGA
3' ss Score
9.59
5' ss Seq
AAGGTAATC
5' ss Score
7.46
Exon sequences
Seq C1 exon
GGACCTCCTGGAATACAAGGAATACACCAAACTCTTGGTGGATATTATAACAAGGATAACAAG
Seq A exon
GGAAATGATGAACATGAAGCTGGAGGCCTGAAAGGAGACAAG
Seq C2 exon
GGTGAAACTGGACTACCAGGATTTCCAGGGTCTGTTGGCCCTAAAGGACAAAAAGGAGAACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000082293_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(22.2=66.7)
A:
PF0139113=Collagen=PU(11.0=64.3)
C2:
PF0139113=Collagen=FE(30.3=100),PF0139113=Collagen=PU(7.7=23.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACCTCCTGGAATACAAGGA
R:
GTTCTCCTTTTTGTCCTTTAGGGC
Band lengths:
124-166
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)