MmuEX6023343 @ mm10
Exon Skipping
Gene
ENSMUSG00000026141 | Col19a1
Description
collagen, type XIX, alpha 1 [Source:MGI Symbol;Acc:MGI:1095415]
Coordinates
chr1:24332430-24352335:-
Coord C1 exon
chr1:24352282-24352335
Coord A exon
chr1:24337898-24337939
Coord C2 exon
chr1:24332430-24332492
Length
42 bp
Sequences
Splice sites
3' ss Seq
TGTTGTCATTTTTTACCCAGGGA
3' ss Score
7.63
5' ss Seq
AAGGTAATC
5' ss Score
7.46
Exon sequences
Seq C1 exon
GGACCTCCTGGGTTACAAGGACTACAGCAGCCTTTTGGTGGATATTTCAATAAG
Seq A exon
GGAACTGGTGAGCACGGAGCTAGTGGCCCCAAAGGAGAAAAG
Seq C2 exon
GGCGATACTGGGCTGCCTGGATTTCCAGGGTCTGTTGGCCCTAAAGGACACAAAGGAGAACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026141-'24-21,'24-20,25-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(25.4=100),PF0139113=Collagen=PU(7.5=27.8)
A:
PF0139113=Collagen=PD(0.1=0.0),PF0139113=Collagen=FE(19.4=100)
C2:
PF0139113=Collagen=FE(29.9=100),PF0139113=Collagen=PU(7.4=23.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCTGGGTTACAAGGACTACA
R:
TCCTTTGTGTCCTTTAGGGCC
Band lengths:
108-150
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types