HsaEX0016407 @ hg38
Exon Skipping
Gene
ENSG00000164692 | COL1A2
Description
collagen type I alpha 2 chain [Source:HGNC Symbol;Acc:HGNC:2198]
Coordinates
chr7:94411056-94412682:+
Coord C1 exon
chr7:94411056-94411154
Coord A exon
chr7:94412068-94412121
Coord C2 exon
chr7:94412584-94412682
Length
54 bp
Sequences
Splice sites
3' ss Seq
CATCCTCATTTATTTTATAGGGT
3' ss Score
10.09
5' ss Seq
GTCGTAAGT
5' ss Score
9.9
Exon sequences
Seq C1 exon
GGCCCTCCTGGTAGTCGTGGTGCAAGTGGCCCTGCTGGAGTCCGAGGACCTAATGGAGATGCTGGTCGCCCTGGGGAGCCTGGTCTCATGGGACCCAGA
Seq A exon
GGTCTTCCTGGTTCCCCTGGAAATATCGGCCCCGCTGGAAAAGAAGGTCCTGTC
Seq C2 exon
GGCCTCCCTGGCATCGACGGCAGGCCTGGCCCAATTGGCCCAGCTGGAGCAAGAGGAGAGCCTGGCAACATTGGATTCCCTGGACCCAAAGGCCCCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000164692-'32-34,'32-33,33-34
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
PF0139113=Collagen=PU(11.4=44.4)
C2:
PF0139113=Collagen=FE(45.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAATGGAGATGCTGGTCGCC
R:
CCAGGGAATCCAATGTTGCCA
Band lengths:
133-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development