HsaEX0017195 @ hg19
Exon Skipping
Gene
ENSG00000005339 | CREBBP
Description
CREB binding protein [Source:HGNC Symbol;Acc:2348]
Coordinates
chr16:3795278-3799684:-
Coord C1 exon
chr16:3799628-3799684
Coord A exon
chr16:3795441-3795596
Coord C2 exon
chr16:3795278-3795355
Length
156 bp
Sequences
Splice sites
3' ss Seq
TTTCCTTTCTGGTTGCAAAGGGA
3' ss Score
5.05
5' ss Seq
AAGGTGTGG
5' ss Score
5.28
Exon sequences
Seq C1 exon
GACAATTTCAAAGGATCAGTTTGAAAAGAAGAAAAATGATACCTTAGACCCCGAACC
Seq A exon
GGAGATTGGGAGAAAAGAGGAATGAAGCGCTTGTACAAACAAAAGAAGAAAGCTTTTTCCTGTAGAAGATATCATACGGATGCATTGTAAAATATAGCTGAATCAGCCAACACACGCATTAATGTCAGCACTACTCAAAGTAACCCAGAGAACAAG
Seq C2 exon
TTTCGTTGATTGCAAGGAGTGTGGCCGGAAGATGCATCAGATTTGCGTTCTGCACTATGACATCATTTGGCCTTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000005339-'21-22,'21-21,22-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.625 A=1.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062824=PHD=PU(23.4=55.0)
A:
NO
C2:
PF0062824=PHD=FE(55.3=100),PF127602=Zn_Tnp_IS1595=PU(27.3=33.3)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAATTTCAAAGGATCAGTTTGAAA
R:
AGGCCAAATGATGTCATAGTGCA
Band lengths:
130-286
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)