HsaEX0017195 @ hg38
Exon Skipping
Gene
ENSG00000005339 | CREBBP
Description
CREB binding protein [Source:HGNC Symbol;Acc:HGNC:2348]
Coordinates
chr16:3745277-3749683:-
Coord C1 exon
chr16:3749627-3749683
Coord A exon
chr16:3745440-3745595
Coord C2 exon
chr16:3745277-3745354
Length
156 bp
Sequences
Splice sites
3' ss Seq
TTTCCTTTCTGGTTGCAAAGGGA
3' ss Score
5.05
5' ss Seq
AAGGTGTGG
5' ss Score
5.28
Exon sequences
Seq C1 exon
GACAATTTCAAAGGATCAGTTTGAAAAGAAGAAAAATGATACCTTAGACCCCGAACC
Seq A exon
GGAGATTGGGAGAAAAGAGGAATGAAGCGCTTGTACAAACAAAAGAAGAAAGCTTTTTCCTGTAGAAGATATCATACGGATGCATTGTAAAATATAGCTGAATCAGCCAACACACGCATTAATGTCAGCACTACTCAAAGTAACCCAGAGAACAAG
Seq C2 exon
TTTCGTTGATTGCAAGGAGTGTGGCCGGAAGATGCATCAGATTTGCGTTCTGCACTATGACATCATTTGGCCTTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000005339_MULTIEX1-3/9=2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.579 A=1.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062824=PHD=PU(23.4=55.0)
A:
NO
C2:
PF0062824=PHD=FE(55.3=100)
Main Inclusion Isoform:
ENST00000262367fB1818
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAATTTCAAAGGATCAGTTTGAAA
R:
AGGCCAAATGATGTCATAGTGCA
Band lengths:
130-286
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development