HsaEX0017390 @ hg19
Exon Skipping
Gene
ENSG00000116791 | CRYZ
Description
crystallin, zeta (quinone reductase) [Source:HGNC Symbol;Acc:2419]
Coordinates
chr1:75190395-75198714:-
Coord C1 exon
chr1:75198640-75198714
Coord A exon
chr1:75198451-75198522
Coord C2 exon
chr1:75190395-75190518
Length
72 bp
Sequences
Splice sites
3' ss Seq
CCTGCCCTCTGTCCTCCCAGAGA
3' ss Score
10.59
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
AGAAGGTGTGGCAGTCCTCATTTCTGTGGAATCTGAAGAAGCCCACGCAGATTTTAATTCCCACTCTAGATTCTG
Seq A exon
AGAACTAGTGCGTAGAGCTCCAGACCGAAGCCATTCCCCTCCAGGGGCTGCAAGTTCCCATCCATAAATCAG
Seq C2 exon
TATCTAGATCACCATGGCGACTGGACAGAAGTTGATGAGAGCTGTTAGAGTTTTTGAATTTGGTGGGCCAGAAGTCCTGAAATTGCGATCAGATATTGCAGTACCGATTCCAAAAGACCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000116791_MULTIEX2-1/4=C1-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF082407=ADH_N=PU(2.1=5.4)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATCTGAAGAAGCCCACGCA
R:
TGGTCTTTTGGAATCGGTACTGC
Band lengths:
167-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)