HsaEX0017393 @ hg19
Exon Skipping
Gene
ENSG00000116791 | CRYZ
Description
crystallin, zeta (quinone reductase) [Source:HGNC Symbol;Acc:2419]
Coordinates
chr1:75188802-75198714:-
Coord C1 exon
chr1:75198640-75198714
Coord A exon
chr1:75190395-75190518
Coord C2 exon
chr1:75188802-75188954
Length
124 bp
Sequences
Splice sites
3' ss Seq
TAATTTTTTTTCTTCCTTAGTAT
3' ss Score
8
5' ss Seq
CAGGTAGAA
5' ss Score
6.68
Exon sequences
Seq C1 exon
AGAAGGTGTGGCAGTCCTCATTTCTGTGGAATCTGAAGAAGCCCACGCAGATTTTAATTCCCACTCTAGATTCTG
Seq A exon
TATCTAGATCACCATGGCGACTGGACAGAAGTTGATGAGAGCTGTTAGAGTTTTTGAATTTGGTGGGCCAGAAGTCCTGAAATTGCGATCAGATATTGCAGTACCGATTCCAAAAGACCATCAG
Seq C2 exon
GTTCTAATCAAGGTCCATGCATGTGGTGTCAACCCCGTGGAGACATACATTCGCTCTGGTACTTATAGTAGAAAACCACTCTTACCCTATACTCCTGGCTCAGATGTGGCTGGGGTGATAGAAGCTGTTGGAGATAATGCATCTGCTTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000116791_MULTIEX2-4/4=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
Show PDB structure
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF082407=ADH_N=PU(2.1=5.4)
C2:
PF082407=ADH_N=FE(51.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGGTGTGGCAGTCCTCAT
R:
TGAAAGCAGATGCATTATCTCCA
Band lengths:
226-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)