MmuEX0012828 @ mm10
Exon Skipping
Gene
ENSMUSG00000028199 | Cryz
Description
crystallin, zeta [Source:MGI Symbol;Acc:MGI:88527]
Coordinates
chr3:154596711-154606531:+
Coord C1 exon
chr3:154596711-154597284
Coord A exon
chr3:154604892-154605015
Coord C2 exon
chr3:154606379-154606531
Length
124 bp
Sequences
Splice sites
3' ss Seq
AATATGTTAATTTCTCTTAGCCT
3' ss Score
3.94
5' ss Seq
CAGGTGGAT
5' ss Score
3.56
Exon sequences
Seq C1 exon
TAAGCTAGCTCCACCATCACCCGGAGGACGCATTAGCATTGCACAGCCTCCCCCGGCCCGGGCCTCACCCCGTCCAGAAGGAGGATGCGCCCTGCGCAGGAGCTGGTGGTGAAAAACTCTTCCCGCGAGTTCAGGAGCTCCACCACCTCCACCGCGTCCTCGTCCACACTGCCCTTGCGGCTAAGGTCCGCCTTGCTCAGACTCTGCGCCTTCCACCGGCCGAACTCCGCGCTACGGTCCATGAGCGAGCGAGCGAGCTGGGGTCGGCTTTCTGCTCTGGAATGCGCCTTCTTCTCCATGGGCGCAGCCATATTGCCGCCACGGTGGCCGGAGAGGACCAAAGTTCCCCATTGGCGCAACCAGGAGCAAGACGTGCGCCGCCAGACCGTACAGGCGTAAACCGAGAGGGGGAGCCTAGCGAAGTTAGGGAAAGCCAGCCCACCTCTTTCCCCACAGACCTTCTGGAGCTTAGGAGGTTTTGTTTCCTACTCTAGAGGAGG
Seq A exon
CCTCTAGGTCGCCATGGCAACTGGGCAGAAGTTGATGAGGGCTATTCGAGTGTTTGAGTTTGGTGGACCAGAAGTGCTGAAGCTCCAGTCGGATGTGGTCGTGCCTGTTCCACAGAGCCATCAG
Seq C2 exon
GTCCTAATCAAAGTCCACGCCTGCGGTGTCAACCCAGTAGAGACATACATTCGCTCTGGGGCCTACAGTCGAAAACCTGCCCTACCCTACACTCCAGGCTCTGATGTGGCTGGGATCATAGAATCCGTTGGAGACAAAGTGTCTGCTTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028199_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.004
Domain overlap (PFAM):
C1:
NA
A:
PF082407=ADH_N=PU(2.1=5.4)
C2:
PF082407=ADH_N=FE(51.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGCGCCTTCTTCTCCATGG
R:
CGCAGGCGTGGACTTTGATTA
Band lengths:
245-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types