GgaEX0017093 @ galGal4
Exon Skipping
Gene
ENSGALG00000011361 | CRYZ
Description
quinone oxidoreductase [Source:RefSeq peptide;Acc:NP_001073231]
Coordinates
chr8:28537964-28538950:-
Coord C1 exon
chr8:28538676-28538950
Coord A exon
chr8:28538442-28538559
Coord C2 exon
chr8:28537964-28538116
Length
118 bp
Sequences
Splice sites
3' ss Seq
CTATTTTCGTTTATCTCCAGGAT
3' ss Score
9.99
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GCTGATCCCCGCCGCGGGTCGCGGGGTCGGCCGGGACGGTCTTCTGCTGCTGTTCTGAGTGCTGCTTTAACAGTGAGCGGAGAGCGGGGCAGTGCGTGACCACGTTCAGAGTCCGCTTGGCAGCGGCGTGGCCGAACGCCGGCGGTGGTTGTCCCGGAGCGCCTCCGCCTGCACCGCGACCTCGGCAGCCGCTGCCGGAGCGCCACGCGTTGCGTGCTGGCCGCACAGCGCTCGGGAGGACCTCCGCGGTCAGGGGAATTTTGTGCCGTCTTGGG
Seq A exon
GATGGCCGCGGCAGCCGCAAGGGGTGCGATGAGGGCGGTCCGGGTGTTTGAGTTCGGGGGCCCCGAGGTGCTGAGGCTGCAGGCAGATGTCCCCATCCCCTCTCCGGAGGACGCTCAG
Seq C2 exon
GTGTTGATTAAGGTCCACGCCTGCGGGGTAAACCCTGTGGAGACCTACATCCGTTCTGGGAACTACGCGAGAAAACCGGCCTTGCCTTACACGCCCGGCTCCGACGTGGCTGGTGTGATTGAGGGTGTTGGGGGACGCGTGACTGCATTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011361_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.026 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF082407=ADH_N=PU(2.1=5.1)
C2:
PF082407=ADH_N=FE(52.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGCTGCTGTTCTGAGTGC
R:
GCAGGCGTGGACCTTAATCAA
Band lengths:
258-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]