RnoEX0024744 @ rn6
Exon Skipping
Gene
ENSRNOG00000028319 | Cryz
Description
crystallin zeta [Source:RGD Symbol;Acc:1311639]
Coordinates
chr2:260884337-260895189:+
Coord C1 exon
chr2:260884337-260884403
Coord A exon
chr2:260891043-260891159
Coord C2 exon
chr2:260895037-260895189
Length
117 bp
Sequences
Splice sites
3' ss Seq
TCATTTGTCTTGGCCTCTAGATC
3' ss Score
9.54
5' ss Seq
CAGGTGGAT
5' ss Score
3.56
Exon sequences
Seq C1 exon
GCCCGCCCATCTCTTTTCCTAAGGAACTTCTGGAGTTTAGGAGGTTTGATTCCTACTGTAGAGGAGG
Seq A exon
ATCACCATGGCAACTGGACAGAAGTTGATGAGGGCTATTCGAGTGTTTGAATTTGGTGGACCGGAAGTGCTGAAGCTCCAGTCTGATGTGGTAGTTCCTGCTCCACAGAGCCATCAG
Seq C2 exon
GTCCTAATCAAAGTCCATGCCTGCGGCGTCAACCCCGTAGAGACATACATTCGCTCCGGGACCTACAGTCGGAAGCCTGCCTTACCCTACACTCCAGGCAGCGATGTGGCTGGGATCATAGAATCTGTTGGAGATGGTGTGTCTGCTTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028319_MULTIEX1-2/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF082407=ADH_N=PU(1.9=5.4)
C2:
PF082407=ADH_N=FE(47.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCGCCCATCTCTTTTCCTA
R:
TGAAAGCAGACACACCATCTCC
Band lengths:
218-335
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]