RnoEX0024743 @ rn6
Exon Skipping
Gene
ENSRNOG00000028319 | Cryz
Description
crystallin zeta [Source:RGD Symbol;Acc:1311639]
Coordinates
chr2:260884337-260891159:+
Coord C1 exon
chr2:260884337-260884403
Coord A exon
chr2:260885656-260885870
Coord C2 exon
chr2:260891043-260891159
Length
215 bp
Sequences
Splice sites
3' ss Seq
CAGTTTCTCATACATTCCAGAAC
3' ss Score
6.27
5' ss Seq
AAGGTAACC
5' ss Score
9.24
Exon sequences
Seq C1 exon
GCCCGCCCATCTCTTTTCCTAAGGAACTTCTGGAGTTTAGGAGGTTTGATTCCTACTGTAGAGGAGG
Seq A exon
AACTCATTTCAGAGAGATGGACAATCGATGCCAACATTTCCAAAAATGAAGTTGTAAGATTATAAGCTGAGGAAAACAAAATCAGCCTACATTTAAGGCACTGAACTTGGGTTCTAACCCTGCTGTGACCTCTGTGACCTCTGCCAGGGTTTCTGAACCTCTTCTAATGTCTTCCGATTCATAAAAGGAAACTTGGCTTTTTAGCTCTGCATAAG
Seq C2 exon
ATCACCATGGCAACTGGACAGAAGTTGATGAGGGCTATTCGAGTGTTTGAATTTGGTGGACCGGAAGTGCTGAAGCTCCAGTCTGATGTGGTAGTTCCTGCTCCACAGAGCCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028319_MULTIEX1-1/2=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF082407=ADH_N=PU(1.9=5.4)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCGCCCATCTCTTTTCCTA
R:
TCTGTGGAGCAGGAACTACCA
Band lengths:
176-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]