BtaEX6017045 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003162 | CRYZ
Description
Bos taurus crystallin, zeta (quinone reductase) (CRYZ), mRNA. [Source:RefSeq mRNA;Acc:NM_174025]
Coordinates
chr3:70247397-70253993:+
Coord C1 exon
chr3:70247397-70247692
Coord A exon
chr3:70252125-70252248
Coord C2 exon
chr3:70253841-70253993
Length
124 bp
Sequences
Splice sites
3' ss Seq
TGTTGTTTTTTTTTTCTTAGTAT
3' ss Score
8.25
5' ss Seq
CAGGTGGAA
5' ss Score
1.62
Exon sequences
Seq C1 exon
GGCTCCTTCTCTCCGGTCTTTCCTCCTGCTTTGATGACATCTTGGAGAGAATTGTGTAGACCCCTTCTACCCCGCCATGACCCTCATCTAGAAGACTCTTCAAAAAACAAAATTCCCTGTTAGCACGTCGTTGGGTATTTACACGTTTCTAGAGGAGACTTATCTCAGTGACCAAGGAAGGTGTATTAATGATTCAACCACTGAAGGGCTAAAGTTTGGACTGATTGTCAGCAACTAGTGGAAATGGCTTCCCACGTGGCACAGTGCTAAAGAATCCGCCTGCCAACGTAGGACAG
Seq A exon
TATCTAGATCACCATGGCAACTGGACAGAAGTTGATGAGAGCTATTAGAGTTTTTGAATTTGGTGGACCAGAAGTGCTGAAACTCCAGTCGGATGTTGCTGTACCAATTCCGAAAGACCATCAG
Seq C2 exon
GTTCTCATCAAAGTCCAAGCGTGTGGTGTAAACCCAGTGGACACATACATTCGCTCTGGTACTCACAATATAAAACCACTTCTACCTTATACTCCTGGCTTCGATGTGGCTGGGATAATAGAAGCTGTTGGAGAGAGTGTATCTGCTTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003162-'1-7,'1-6,5-7=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF082407=ADH_N=PU(1.4=5.4)
C2:
PF082407=ADH_N=FE(33.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCCATGACCCTCATCTAGA
R:
CACCACACGCTTGGACTTTGA
Band lengths:
253-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]