HsaEX0017603 @ hg19
Exon Skipping
Gene
ENSG00000110925 | CSRNP2
Description
cysteine-serine-rich nuclear protein 2 [Source:HGNC Symbol;Acc:16006]
Coordinates
chr12:51454990-51461752:-
Coord C1 exon
chr12:51461456-51461752
Coord A exon
chr12:51458848-51458890
Coord C2 exon
chr12:51454990-51458452
Length
43 bp
Sequences
Splice sites
3' ss Seq
TCCCATGCCTGTCATTGCAGGCC
3' ss Score
7.88
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
CTGACCAAGAATGGGACAGTGGAGTCGGTGGAGGCTGATGGCCTGACGCTGGATGATGTGTCAGATGAAGATATTGATGTGGAAAATGTGGAGGTGGATGATTACTTCTTCCTGCAGCCTCTGCCCACCAAACGGCGACGGGCCCTGCTGAGGGCTTCTGGGGTCCACCGTATTGATGCTGAAGAGAAGCAAGAACTTCGAGCCATCCGCCTGTCACGGGAAGAATGTGGTTGTGACTGCCGACTGTATTGTGACCCAGAAGCGTGTGCCTGCAGCCAGGCTGGGATTAAATGCCAG
Seq A exon
GCCATAGGCTTGGTTCCAGCCTTTTGTTGTCTCAGTGAACCAG
Seq C2 exon
GTGGATCGCATGTCCTTTCCATGTGGCTGCTCCCGGGATGGCTGTGGGAACATGGCAGGACGCATTGAATTTAATCCAATCCGGGTCCGGACTCATTACCTCCACACCATTATGAAGCTGGAGCTGGAGAGCAAGCGGCAGGTGAGCCGCCCAGCAGCCCCAGATGAGGAGCCCTCCCCGACTGCCAGTTGCAGCCTGACAGGAGCACAGGGCTCTGAGACCCAGGACTTCCAGGAGTTCATTGCTGAGAATGAGACAGCAGTGATGCACCTGCAGAGTGCAGAGGAACTGGAGCGGCTCAAGGCAGAAGAAGATTCCAGCGGCTCTAGTGCCAGCCTGGACTCGAGCATCGAGAGCCTGGGTGTGTGCATCCTAGAGGAGCCTCTGGCTGTCCCCGAAGAGCTGTGCCCAGGCCTTACAGCCCCCATTCTCATCCAGGCTCAGCTGCCCCCAGGCTCCTCTGTCCTGTGTTTTACCGAGAACTCAGACCACCCAACTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000110925_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
Show structural model
Features
Disorder rate (Iupred):
C1=0.010 A=0.000 C2=0.493
Domain overlap (PFAM):
C1:
PF098174=DUF2352=PD(65.3=62.6)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATGTGGTTGTGACTGCCGA
R:
ATTCAATGCGTCCTGCCATGT
Band lengths:
145-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)