HsaEX0017603 @ hg38
Exon Skipping
Gene
ENSG00000110925 | CSRNP2
Description
cysteine and serine rich nuclear protein 2 [Source:HGNC Symbol;Acc:HGNC:16006]
Coordinates
chr12:51060329-51067969:-
Coord C1 exon
chr12:51067673-51067969
Coord A exon
chr12:51065065-51065107
Coord C2 exon
chr12:51060329-51061821
Length
43 bp
Sequences
Splice sites
3' ss Seq
TCCCATGCCTGTCATTGCAGGCC
3' ss Score
7.88
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
CTGACCAAGAATGGGACAGTGGAGTCGGTGGAGGCTGATGGCCTGACGCTGGATGATGTGTCAGATGAAGATATTGATGTGGAAAATGTGGAGGTGGATGATTACTTCTTCCTGCAGCCTCTGCCCACCAAACGGCGACGGGCCCTGCTGAGGGCTTCTGGGGTCCACCGTATTGATGCTGAAGAGAAGCAAGAACTTCGAGCCATCCGCCTGTCACGGGAAGAATGTGGTTGTGACTGCCGACTGTATTGTGACCCAGAAGCGTGTGCCTGCAGCCAGGCTGGGATTAAATGCCAG
Seq A exon
GCCATAGGCTTGGTTCCAGCCTTTTGTTGTCTCAGTGAACCAG
Seq C2 exon
GGTGAGGTTTGCCCACTGTCTCTGCAGGAAGGCTCCGGCTTAATCTAGGAAGTAGATTCCAGCTGCACGATGAGGAACACATTAGCTTTTGGGATCAAACCAGGAATATGAATCTGTAATTATTAAGCTCATTGCCAACCCACAAGATATGTTTCTGAAAACCTGTAGTTTCTTAATTTAAGTCCATCCCCTTCATTAACGCTACAGTTGTGACTCACACTGATCCCAAACTTTTAAGTGCTAAATATTAACATTTAGCATTAACTGTCTTGTCAAGCGAAAGGCCTTCTCTACAACCTAGTCCATCTCACTTCTGGTGCTACCTGAGTTGGACAGAATTCTAGCTCATGGTTGCTAGGAAAGCTAGGCCTCTGATCATAGAAGCAGATAGCTTCAGTCCCAGTCTAGGCCTAGATAAATGACTCTTATTACCACAACCCTTATTATTTTCCAATTTCCTTTCTCACATACTGTACACAGGTAGTATTTTCAATGTGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000110925_MULTIEX2-5/5=3-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
Show structural model
Features
Disorder rate (Iupred):
C1=0.023 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Inclusion Isoform:
ENST00000228515fB1871
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGTCACGGGAAGAATGTGG
R:
AGATTAAGCCGGAGCCTTCCT
Band lengths:
134-177
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development