HsaEX0018440 @ hg19
Exon Skipping
Gene
ENSG00000136848 | DAB2IP
Description
DAB2 interacting protein [Source:HGNC Symbol;Acc:17294]
Coordinates
chr9:124530711-124533003:+
Coord C1 exon
chr9:124530711-124530912
Coord A exon
chr9:124531496-124531631
Coord C2 exon
chr9:124532825-124533003
Length
136 bp
Sequences
Splice sites
3' ss Seq
GAATATCTGTTGCTTTCTAGGGC
3' ss Score
8.84
5' ss Seq
TGTGTAAGC
5' ss Score
4.52
Exon sequences
Seq C1 exon
ATTTGGCAGCAAGGAGGAATACATGTCCTTCATGAACCAGTTCCTAGAGCATGAGTGGACCAACATGCAGCGCTTCCTGCTGGAGATCTCCAACCCCGAGACCCTCTCCAATACAGCCGGCTTCGAGGGCTACATCGACCTGGGCCGCGAGCTCTCCAGCCTGCACTCACTGCTCTGGGAGGCCGTCAGCCAGCTGGAGCAG
Seq A exon
GGCTCCAAGGGACCACCTTACTTTTGTAAGGTGCTGAAACTGGCCTGGAAGGCCCTTCATGCCTCCTGGTCCCATTCCCTAGAGGTGACCGCTCAGAGCACTGGTATGCAGCCTTCTGGACACGATCTGTGCATGT
Seq C2 exon
AGCATAGTATCCAAACTGGGACCCCTGCCTCGGATCCTGAGGGACGTCCACACAGCACTGAGCACCCCAGGTAGCGGGCAGCTCCCAGGGACCAATGACCTGGCCTCCACACCGGGCTCTGGCAGCAGCAGCATCTCAGCTGGGCTGCAGAAGATGGTGATTGAGAACGATCTTTCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136848-'24-20,'24-19,25-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.467
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF120043=DUF3498=PU(9.1=78.3)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCGAGGGCTACATCGACCT
R:
AATCACCATCTTCTGCAGCCC
Band lengths:
244-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)