HsaEX0018440 @ hg38
Exon Skipping
Gene
ENSG00000136848 | DAB2IP
Description
DAB2 interacting protein [Source:HGNC Symbol;Acc:HGNC:17294]
Coordinates
chr9:121768432-121770724:+
Coord C1 exon
chr9:121768432-121768633
Coord A exon
chr9:121769217-121769300
Coord C2 exon
chr9:121770546-121770724
Length
84 bp
Sequences
Splice sites
3' ss Seq
GAATATCTGTTGCTTTCTAGGGC
3' ss Score
8.84
5' ss Seq
GAGGTGACC
5' ss Score
5.57
Exon sequences
Seq C1 exon
ATTTGGCAGCAAGGAGGAATACATGTCCTTCATGAACCAGTTCCTAGAGCATGAGTGGACCAACATGCAGCGCTTCCTGCTGGAGATCTCCAACCCCGAGACCCTCTCCAATACAGCCGGCTTCGAGGGCTACATCGACCTGGGCCGCGAGCTCTCCAGCCTGCACTCACTGCTCTGGGAGGCCGTCAGCCAGCTGGAGCAG
Seq A exon
GGCTCCAAGGGACCACCTTACTTTTGTAAGGTGCTGAAACTGGCCTGGAAGGCCCTTCATGCCTCCTGGTCCCATTCCCTAGAG
Seq C2 exon
AGCATAGTATCCAAACTGGGACCCCTGCCTCGGATCCTGAGGGACGTCCACACAGCACTGAGCACCCCAGGTAGCGGGCAGCTCCCAGGGACCAATGACCTGGCCTCCACACCGGGCTCTGGCAGCAGCAGCATCTCAGCTGGGCTGCAGAAGATGGTGATTGAGAACGATCTTTCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136848_MULTIEX3-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.462
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF120043=DUF3498=PU(9.1=78.3)
Main Inclusion Isoform:
ENST00000259371fB1947
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAGTGGACCAACATGCAGC
R:
AGGGGTCCCAGTTTGGATACT
Band lengths:
178-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development