HsaEX0019089 @ hg19
Exon Skipping
Gene
ENSG00000119522 | DENND1A
Description
DENN/MADD domain containing 1A [Source:HGNC Symbol;Acc:29324]
Coordinates
chr9:126150009-126165769:-
Coord C1 exon
chr9:126165681-126165769
Coord A exon
chr9:126163984-126164191
Coord C2 exon
chr9:126150009-126150137
Length
208 bp
Sequences
Splice sites
3' ss Seq
AATATTCTTGCATTACACAGAAA
3' ss Score
4.94
5' ss Seq
TGTGTCAGT
5' ss Score
-2.28
Exon sequences
Seq C1 exon
GTGCGCCCACCTCGTCCACATGTTGTTAAGAGACCAAAGAGCAACATCGCAGTGGAAGGCCGGAGGACGTCTGTGCCGAGCCCTGAGCA
Seq A exon
AAACACCATTGCAACACCAGCTACACTCCACATCCTACAGAAAAGCATTACCCATTTTGCGGCCAAGTTCCCGACGAGAGGCTGGACCTCTTCATCACATTGACTTACGCCGTTGCTTTTCCAGACTGGGCAGAGGGGCTGACTTCGCAGTGTGTGCCAAAGAGCCGGTGTCTGATAATCCCATTTTCCTGCTTATCACCTGAACTGT
Seq C2 exon
CCTGGTAAAGCCCTTGCGACACTATGCGGTCTTCCTCTCCGAAGACTCCTCTGATGATGAATGCCAGCGGGAAGAGGGCCCGAGCTCTGGCTTCACCGAGAGCTTTTTCTTCTCCGCTCCCTTTGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119522-'47-54,'47-52,48-54
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.735 C2=0.455
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACCTCGTCCACATGTTGTT
R:
CATTCAAAGGGAGCGGAGAAGA
Band lengths:
212-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)