HsaEX0019089 @ hg38
Exon Skipping
Gene
ENSG00000119522 | DENND1A
Description
DENN domain containing 1A [Source:HGNC Symbol;Acc:HGNC:29324]
Coordinates
chr9:123383655-123403573:-
Coord C1 exon
chr9:123403402-123403573
Coord A exon
chr9:123401705-123401912
Coord C2 exon
chr9:123383655-123383913
Length
208 bp
Sequences
Splice sites
3' ss Seq
AATATTCTTGCATTACACAGAAA
3' ss Score
4.94
5' ss Seq
TGTGTCAGT
5' ss Score
-2.28
Exon sequences
Seq C1 exon
CGTTTATCCAAATGTTCAGAATGTACCTGTATGGCTTTTCCAACTCACTCCTTCTTGGGGCTCTCCCCCTGTACCTCCTCTAGGTGCGCCCACCTCGTCCACATGTTGTTAAGAGACCAAAGAGCAACATCGCAGTGGAAGGCCGGAGGACGTCTGTGCCGAGCCCTGAGCA
Seq A exon
AAACACCATTGCAACACCAGCTACACTCCACATCCTACAGAAAAGCATTACCCATTTTGCGGCCAAGTTCCCGACGAGAGGCTGGACCTCTTCATCACATTGACTTACGCCGTTGCTTTTCCAGACTGGGCAGAGGGGCTGACTTCGCAGTGTGTGCCAAAGAGCCGGTGTCTGATAATCCCATTTTCCTGCTTATCACCTGAACTGT
Seq C2 exon
GCCGCAGCCGTATCGGACACTCAGGGAGTCAGACAGCGCGGAAGGCGACGAGGCAGAGAGTCCAGAGCAGCAAGTGCGGAAGTCCACAGGCCCTGTCCCAGCTCCCCCTGACCGGGCTGCCAGCATCGACCTTCTGGAAGACGTCTTCAGCAACCTGGACATGGAGGCCGCACTGCAGCCACTGGGCCAGGCCAAGAGCTTAGAGGACCTTCGTGCCCCCAAAGACCTGAGGGAGCAGCCAGGGACCTTTGACTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119522_MULTIEX4-1/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.735 C2=0.812
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000373624fB2015
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACTCACTCCTTCTTGGGGC
R:
GTCCAGGTTGCTGAAGACGTC
Band lengths:
292-500
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development