HsaEX0019103 @ hg19
Exon Skipping
Gene
ENSG00000119522 | DENND1A
Description
DENN/MADD domain containing 1A [Source:HGNC Symbol;Acc:29324]
Coordinates
chr9:126214555-126217058:-
Coord C1 exon
chr9:126217018-126217058
Coord A exon
chr9:126215105-126215187
Coord C2 exon
chr9:126214555-126214626
Length
83 bp
Sequences
Splice sites
3' ss Seq
CATTCTTTCCTTTTTTCAAGATT
3' ss Score
8.57
5' ss Seq
ACGGTGAGG
5' ss Score
9.2
Exon sequences
Seq C1 exon
GCAGTGACAAACTGTACCATCAGTGGCTCTCCACTGTCCGG
Seq A exon
ATTTAGATGTTAAGGAAGGCAGCCTACCAGAGAGATTTAAAAAAACACCACAGAAAACCAAGGAAAGAAAAGGAAGTTGCACG
Seq C2 exon
AAAGGAAGTGGAGCAATTCTGAATACTGTAAAGACCAAAGCAAATCCGGCCATGAAGACTGTCTACAAGTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119522_MULTIEX2-5/7=4-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.157
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGACAAACTGTACCATCAGTGG
R:
GAACTTGTAGACAGTCTTCATGGC
Band lengths:
111-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)