HsaEX0019100 @ hg19
Exon Skipping
Gene
ENSG00000119522 | DENND1A
Description
DENN/MADD domain containing 1A [Source:HGNC Symbol;Acc:29324]
Coordinates
chr9:126214555-126319974:-
Coord C1 exon
chr9:126319849-126319974
Coord A exon
chr9:126220072-126220176
Coord C2 exon
chr9:126214555-126214626
Length
105 bp
Sequences
Splice sites
3' ss Seq
CTCCCCTCTGCACTTCCCAGGAG
3' ss Score
7.66
5' ss Seq
CAGGTGCCT
5' ss Score
5.4
Exon sequences
Seq C1 exon
ATCTCTTCCCTGAAGAACAGGCTGAAAAAGGTCTCCACAACCACTGGGGATGGTGTGGCCAGAGCGTTCCTCAAGGCCCAGGCTGCTTTCTTCGGTAGCTACCGAAACGCTCTGAAAATCGAGCCG
Seq A exon
GAGGAGCCGATCACTTTCTGTGAGGAAGCCTTCGTGTCCCACTACCGCTCCGGAGCCATGAGGCAGTTCCTGCAGAACGCCACACAGCTGCAGCTCTTCAAGCAG
Seq C2 exon
AAAGGAAGTGGAGCAATTCTGAATACTGTAAAGACCAAAGCAAATCCGGCCATGAAGACTGTCTACAAGTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119522_MULTIEX2-2/7=1-6
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.157
Domain overlap (PFAM):
C1:
PF0345514=dDENN=PU(39.7=64.3)
A:
PF0345514=dDENN=FE(50.0=100)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAAGAACAGGCTGAAAAAGGT
R:
CTTGTAGACAGTCTTCATGGCCG
Band lengths:
186-291
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)