GgaEX0001248 @ galGal4
Exon Skipping
Gene
ENSGALG00000001157 | DENND1A
Description
DENN/MADD domain containing 1A [Source:HGNC Symbol;Acc:HGNC:29324]
Coordinates
chr17:9034090-9089548:-
Coord C1 exon
chr17:9089423-9089548
Coord A exon
chr17:9061816-9061917
Coord C2 exon
chr17:9034090-9034178
Length
102 bp
Sequences
Splice sites
3' ss Seq
TAATCCTCTGAACTCTGCAGGGC
3' ss Score
6.1
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
GTTTCTGCTCTGAAGAACAGATTGAAGAAGGTTTCTACAACCACTGGAGATGGCGTTGCCAGAGCTTTTCTCAAGGCGCAGGCGTCTTTCTTCGGGAGCTACAGAAACGCACTGAAAATCGAACCT
Seq A exon
GGCGAACCCATCACGTTTTGTGAAGAAACATTTGTGTCCCATCGTTCTGCTGTCATGAGGCAGTTCCTTCAGAATGCCATTCAGCTCCAGCTCTTTAAGCAG
Seq C2 exon
GTTCGTCCTCCAAGACCTCATATTGTTAAGAGACCCAAGAGCAACATTGCTGTGGAAGCAAGAAGGACTTCCATTTCCAGTCCAGAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001157_MULTIEX2-12/19=11-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0345514=dDENN=PU(40.3=64.3)
A:
PF0345514=dDENN=FE(49.3=100)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGAACAGATTGAAGAAGGTTTCT
R:
TGTTCTGGACTGGAAATGGAAGT
Band lengths:
205-307
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]