DreEX0003534 @ danRer10
Exon Skipping
Gene
ENSDARG00000014592 | DENND1A
Description
DENN/MADD domain containing 1A [Source:HGNC Symbol;Acc:HGNC:29324]
Coordinates
chr21:8359572-8362473:+
Coord C1 exon
chr21:8359572-8359697
Coord A exon
chr21:8361515-8361616
Coord C2 exon
chr21:8362433-8362473
Length
102 bp
Sequences
Splice sites
3' ss Seq
GTGTTTTACCTTATATTCAGGAG
3' ss Score
7.64
5' ss Seq
CAGGTAATA
5' ss Score
8.55
Exon sequences
Seq C1 exon
GTTTCATCTTTAAAGAACCGCCTAAGAAAAGTGTCTTCATCAACTGGAGATGGAGTGGCTCGAGCGTTTCTGAAGGCACAGGCGGCTTTGTTTGGGAGTTACAGAAACGCGCTACACATCGAACCG
Seq A exon
GAGGAGCCAATCACGTTCAGTGAGGAAACCTTCATCACACACCGGTCCAGCACAATGAGACAGTTTCTGCAGAACGCTATCCAGCTACAGTTCTTCAAACAG
Seq C2 exon
GCAGTGATAAAACGTATCATCAGTGGCTTTTCACAGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014592_MULTIEX1-12/18=11-14
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0345514=dDENN=PU(40.3=64.3)
A:
PF0345514=dDENN=FE(49.3=100)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTCATCTTTAAAGAACCGCCT
R:
TCACTGTGAAAAGCCACTGATGA
Band lengths:
165-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]