MmuEX6100948 @ mm9
Exon Skipping
Gene
ENSMUSG00000035392 | Dennd1a
Description
DENN/MADD domain containing 1A [Source:MGI Symbol;Acc:MGI:2442794]
Coordinates
chr2:37713538-37792264:-
Coord C1 exon
chr2:37792139-37792264
Coord A exon
chr2:37713888-37713992
Coord C2 exon
chr2:37713538-37713625
Length
105 bp
Sequences
Splice sites
3' ss Seq
GTCCCTTCTCCATTTCCCAGGAA
3' ss Score
9.69
5' ss Seq
CAGGTGCTC
5' ss Score
3.6
Exon sequences
Seq C1 exon
ATCTCCTCCCTGAAGAACAGGCTGAAGAAGGTCTCTACAACCACAGGTGATGGGGTGGCCAGAGCCTTCCTCAAGGCCCAGGCTGCTTTCTTTGGCAGCTACCGGAATGCACTGAAAATTGAGCCA
Seq A exon
GAAGAACCCATCACTTTCAGTGAGGAAGCCTTTGTATCCCACTACCGCTCTGGAGCCATGAAACAGTTCCTACAGAATGCCACACAGTTGCAGCTCTTCAAGCAG
Seq C2 exon
TTTATCGATGGCCGACTAGACCTTCTCAATTCCGGTGAAGGTTTCAGCGATGTCTTTGAGGAGGAAATCAACATGGGAGAGTATGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035392-'30-28,'30-27,32-28=AN
Average complexity
A_S
Mappability confidence:
89%=100=75%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.069 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0345514=dDENN=PU(56.2=64.3)
A:
PF0345514=dDENN=FE(50.0=100)
C2:
PF0345514=dDENN=PD(5.9=13.3)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGAACAGGCTGAAGAAGGT
R:
CGGCATACTCTCCCATGTTGA
Band lengths:
204-309
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: