BtaEX6046061 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003610 | DENND1A
Description
DENN/MADD domain containing 1A [Source:HGNC Symbol;Acc:HGNC:29324]
Coordinates
chr11:94592798-94674335:-
Coord C1 exon
chr11:94674210-94674335
Coord A exon
chr11:94593243-94593347
Coord C2 exon
chr11:94592798-94592885
Length
105 bp
Sequences
Splice sites
3' ss Seq
ATCTTATCTCTGTCTCCCAGGAG
3' ss Score
9.36
5' ss Seq
CAGGTGCCC
5' ss Score
5.77
Exon sequences
Seq C1 exon
ATCTCTTCCTTGAAGAGCCGGCTGAAGAAGGTGTCCACGACAACTGGTGATGGTGTGGCCAGAGCCTTCCTCAAGGCCCAGGCCGCTTTCTTCGGCAGCTACCGAAACGCTCTGAAAATCGAGCCG
Seq A exon
GAGGAGCCAATCACCTTCTGCGAGGAAGCCTTCGTGTCGCACTATCGCTCAGGAGCCATGAGGCAGTTCCTGCAGAATGCCACCCAGCTGCAGCTCTTTAAACAG
Seq C2 exon
TTTATCGATGGTAGATTAGACCTTCTCAATTCTGGCGAGGGCTTCAGTGATGTTTTTGAAGAGGAGATCAACATGAGCGAGTATGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003610-'44-51,'44-50,47-51=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0345514=dDENN=PU(39.7=64.3)
A:
PF0345514=dDENN=FE(50.0=100)
C2:
PF0345514=dDENN=PD(5.9=13.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCTTGAAGAGCCGGCTG
R:
CAGCATACTCGCTCATGTTGA
Band lengths:
210-315
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]