RnoEX0027090 @ rn6
Exon Skipping
Gene
ENSRNOG00000010526 | Dennd1a
Description
DENN domain containing 1A [Source:RGD Symbol;Acc:1307927]
Coordinates
chr3:22119610-22198933:-
Coord C1 exon
chr3:22198808-22198933
Coord A exon
chr3:22119960-22120064
Coord C2 exon
chr3:22119610-22119697
Length
105 bp
Sequences
Splice sites
3' ss Seq
TGTCCCTTCTTCATTCCCAGGAA
3' ss Score
11.33
5' ss Seq
CAGGTGCCC
5' ss Score
5.77
Exon sequences
Seq C1 exon
ATCTCCTCCCTGAAGAACAGGCTGAAGAAGGTCTCCACAACCACAGGCGATGGGGTGGCCAGAGCCTTCCTCAAGGCCCAGGCTGCTTTCTTTGGCAGCTACCGGAATGCACTGAAAATTGAGCCA
Seq A exon
GAAGAACCCATCACTTTCAGTGAGGAGGCCTTCGTGTCCCACTACCGCTCTGGAGCCATGAGACAGTTCCTACAGAATGCCACACAGTTGCAGCTCTTCAAGCAG
Seq C2 exon
TTTATCGATGGCCGACTAGACCTTCTCAATTCCGGTGAAGGTTTCAGTGATGTCTTTGAGGAGGAGATCAGCATGGGAGAATATGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010526-'38-58,'38-56,42-58
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0345514=dDENN=PU(39.7=64.3)
A:
PF0345514=dDENN=FE(50.0=100)
C2:
PF0345514=dDENN=PD(5.9=13.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGAACAGGCTGAAGAAGGT
R:
GGCATATTCTCCCATGCTGATCT
Band lengths:
203-308
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]