GgaEX0001248 @ galGal3
Exon Skipping
Gene
ENSGALG00000001157 | DENND1A
Description
NA
Coordinates
chr17:9774400-9802551:-
Coord C1 exon
chr17:9802426-9802551
Coord A exon
chr17:9774819-9774920
Coord C2 exon
chr17:9774400-9774487
Length
102 bp
Sequences
Splice sites
3' ss Seq
TAATCCTCTGAACTCTGCAGGGC
3' ss Score
6.1
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
GTTTCTGCTCTGAAGAACAGATTGAAGAAGGTTTCTACAACCACTGGAGATGGCGTTGCCAGAGCTTTTCTCAAGGCGCAGGCGTCTTTCTTCGGGAGCTACAGAAACGCACTGAAAATCGAACCT
Seq A exon
GGCGAACCCATCACGTTTTGTGAAGAAACATTTGTGTCCCATCGTTCTGCTGTCATGAGGCAGTTCCTTCAGAATGCCATTCAGCTCCAGCTCTTTAAGCAG
Seq C2 exon
TTCATTGATGGCCGCCTGGATCTTCTTAACTCCGGAGAGGGCTTCAGTGATGCTTTTGAAGAAGAGATAAATATGGGAGAGTATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001157-'20-30,'20-29,22-30
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0345514=dDENN=PU(40.3=64.3)
A:
PF0345514=dDENN=FE(49.3=100)
C2:
PF0345514=dDENN=PD(6.0=13.3)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGAACAGATTGAAGAAGGTTTCT
R:
CTGCATACTCTCCCATATTTATCTCT
Band lengths:
204-306
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]