HsaEX0019108 @ hg38
Exon Skipping
Gene
ENSG00000213047 | DENND1B
Description
DENN domain containing 1B [Source:HGNC Symbol;Acc:HGNC:28404]
Coordinates
chr1:197595208-197598328:-
Coord C1 exon
chr1:197598228-197598328
Coord A exon
chr1:197595745-197595767
Coord C2 exon
chr1:197595208-197595333
Length
23 bp
Sequences
Splice sites
3' ss Seq
AAATTATATATGCAAATGAGACT
3' ss Score
-11.87
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
TTTTGAGCATTCATTTGCCCATGTAGAAACACTTAGCTGCCCTTCTGGTCTCTGAAAAACAGGAACAACTTCAGATGTACTGACAATTGAAGCCCACTAGA
Seq A exon
ACTTCCAAAAATAAAATTAAATG
Seq C2 exon
GTCTCGGCCTTGAAAAATAAACTGAAGAAGCAGTCTACAGCTACGGGTGATGGAGTAGCTAGGGCCTTTCTTAGAGCACAGGCTGCTTTGTTTGGATCCTACAGAGATGCACTGAGATACAAACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213047-'51-44,'51-43,52-44
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show PDB structure
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0345514=dDENN=PU(40.3=64.3)
Main Inclusion Isoform:
ENST00000620048fB2019
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGCTGCCCTTCTGGTCTCTG
R:
ACCCGTAGCTGTAGACTGCTT
Band lengths:
116-139
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development