HsaEX0019114 @ hg19
Exon Skipping
Gene
ENSG00000213047 | DENND1B
Description
DENN/MADD domain containing 1B [Source:HGNC Symbol;Acc:28404]
Coordinates
chr1:197684161-197742062:-
Coord C1 exon
chr1:197741998-197742062
Coord A exon
chr1:197704716-197704926
Coord C2 exon
chr1:197684161-197684204
Length
211 bp
Sequences
Splice sites
3' ss Seq
TTTTGTGCTTCTTTCTGTAGAGG
3' ss Score
9.7
5' ss Seq
CGAGTAATA
5' ss Score
-0.92
Exon sequences
Seq C1 exon
GGCAAATCCAGACAGAACCTTTGACTTGGTGTTGAAAGTGAAATGTCATGCCTCTGAAAATGAAG
Seq A exon
AGGACAGTCCAGCTTATCTGCCGAGGATTCCCCCTGGAAAAGTACGCCGATTCGCATTTTGCATTAAGAAACTGGAAAACTTTCCTGTCGGTCCTGGCGTAGCGCCTCCCGTGTCCGGGGTAGACCTTGTACCGGCTGAAACCGCATAGCTCGACCTTCATGGCGGCAGCTCCACGGGAGGAGAAAAGATGGCCCCAACCTGTATTTTCGA
Seq C2 exon
ATCCTGTGGTATTGTGGAAATTCCCAGAGGACTTTGGAGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213047_MULTIEX1-1/9=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.000 A=0.155 C2=0.000
Domain overlap (PFAM):
C1:
PF0345613=uDENN=PU(7.7=66.7)
A:
PF0345613=uDENN=PU(0.1=0.0)
C2:
PF0345613=uDENN=PU(22.6=93.3)
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)