HsaEX0019114 @ hg38
Exon Skipping
Gene
ENSG00000213047 | DENND1B
Description
DENN domain containing 1B [Source:HGNC Symbol;Acc:HGNC:28404]
Coordinates
chr1:197715031-197772932:-
Coord C1 exon
chr1:197772868-197772932
Coord A exon
chr1:197735586-197735796
Coord C2 exon
chr1:197715031-197715074
Length
211 bp
Sequences
Splice sites
3' ss Seq
TTTTGTGCTTCTTTCTGTAGAGG
3' ss Score
9.7
5' ss Seq
CGAGTAATA
5' ss Score
-0.92
Exon sequences
Seq C1 exon
GGCAAATCCAGACAGAACCTTTGACTTGGTGTTGAAAGTGAAATGTCATGCCTCTGAAAATGAAG
Seq A exon
AGGACAGTCCAGCTTATCTGCCGAGGATTCCCCCTGGAAAAGTACGCCGATTCGCATTTTGCATTAAGAAACTGGAAAACTTTCCTGTCGGTCCTGGCGTAGCGCCTCCCGTGTCCGGGGTAGACCTTGTACCGGCTGAAACCGCATAGCTCGACCTTCATGGCGGCAGCTCCACGGGAGGAGAAAAGATGGCCCCAACCTGTATTTTCGA
Seq C2 exon
ATCCTGTGGTATTGTGGAAATTCCCAGAGGACTTTGGAGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213047-'9-13,'9-11,12-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.000 A=0.164 C2=0.000
Domain overlap (PFAM):
C1:
PF0345613=uDENN=PU(7.7=66.7)
A:
PF0345613=uDENN=PU(0.1=0.0)
C2:
PF0345613=uDENN=PU(22.6=93.3)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development