HsaEX0019144 @ hg19
Exon Skipping
Gene
ENSG00000162777 | DENND2D
Description
DENN/MADD domain containing 2D [Source:HGNC Symbol;Acc:26192]
Coordinates
chr1:111742245-111747031:-
Coord C1 exon
chr1:111746918-111747031
Coord A exon
chr1:111745017-111745067
Coord C2 exon
chr1:111742245-111742420
Length
51 bp
Sequences
Splice sites
3' ss Seq
GAATAATAATTCCTTTCTAGGGC
3' ss Score
6.63
5' ss Seq
GAGGTTAGT
5' ss Score
7.15
Exon sequences
Seq C1 exon
ATAGGGGGGCGGGGCCAGCGCGGAGCTGGGAGCGGGAGCCGGGCACTCCAGGGGCCATGGATGGGCTCGGCCGCCGCCTTCGAGCCAGCCTGAGACTGAAGCGCGGCCATGGGG
Seq A exon
GGCACTGGAGATTAAATGAGATGCCTTATATGAAACATGAGTTTGATGGAG
Seq C2 exon
GACCACCCCAGGACAATTCAGGGGAAGCTTTAAAGGAACCAGAAAGGGCCCAGGAGCACTCTTTGCCCAACTTTGCTGGGGGGCAGCACTTCTTTGAATACCTTCTTGTGGTTTCTCTCAAAAAGAAGCGTTCAGAGGATGATTACGAGCCTATAATCACCTACCAATTTCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162777_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.225 A=0.500 C2=0.349
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0345613=uDENN=PU(12.7=15.3)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCGAGCCAGCCTGAGACT
R:
ATTCAAAGAAGTGCTGCCCCC
Band lengths:
136-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)