HsaEX0019144 @ hg38
Exon Skipping
Gene
ENSG00000162777 | DENND2D
Description
DENN domain containing 2D [Source:HGNC Symbol;Acc:HGNC:26192]
Coordinates
chr1:111199623-111204409:-
Coord C1 exon
chr1:111204296-111204409
Coord A exon
chr1:111202395-111202445
Coord C2 exon
chr1:111199623-111199798
Length
51 bp
Sequences
Splice sites
3' ss Seq
GAATAATAATTCCTTTCTAGGGC
3' ss Score
6.63
5' ss Seq
GAGGTTAGT
5' ss Score
7.15
Exon sequences
Seq C1 exon
ATAGGGGGGCGGGGCCAGCGCGGAGCTGGGAGCGGGAGCCGGGCACTCCAGGGGCCATGGATGGGCTCGGCCGCCGCCTTCGAGCCAGCCTGAGACTGAAGCGCGGCCATGGGG
Seq A exon
GGCACTGGAGATTAAATGAGATGCCTTATATGAAACATGAGTTTGATGGAG
Seq C2 exon
GACCACCCCAGGACAATTCAGGGGAAGCTTTAAAGGAACCAGAAAGGGCCCAGGAGCACTCTTTGCCCAACTTTGCTGGGGGGCAGCACTTCTTTGAATACCTTCTTGTGGTTTCTCTCAAAAAGAAGCGTTCAGAGGATGATTACGAGCCTATAATCACCTACCAATTTCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162777_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.225 A=0.500 C2=0.349
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0345613=uDENN=PU(12.7=15.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCGAGCCAGCCTGAGACT
R:
ATTCAAAGAAGTGCTGCCCCC
Band lengths:
136-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development